##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index15_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	24825102	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.14924027301076	33.0	31.0	34.0	31.0	34.0
2	32.3993776943998	34.0	31.0	34.0	31.0	34.0
3	32.41781951187955	34.0	31.0	34.0	30.0	34.0
4	36.064352847371985	37.0	35.0	37.0	35.0	37.0
5	35.95324277016062	37.0	35.0	37.0	35.0	37.0
6	35.92765741707728	37.0	35.0	37.0	35.0	37.0
7	35.87432365836805	37.0	35.0	37.0	35.0	37.0
8	35.87078965476154	37.0	35.0	37.0	35.0	37.0
9	37.58364859890606	39.0	37.0	39.0	35.0	39.0
10-14	37.74853588919795	39.2	37.2	39.4	34.6	39.4
15-19	38.826978056323796	40.0	38.0	41.0	34.8	41.0
20-24	38.69112658630768	40.0	38.0	41.0	34.0	41.0
25-29	38.46183483153463	40.0	38.0	41.0	34.0	41.0
30-34	38.16162585756948	40.0	37.8	41.0	33.2	41.0
35-39	37.86532021499852	40.0	37.0	41.0	33.0	41.0
40-44	37.65789065438683	39.8	36.8	41.0	32.2	41.0
45-49	37.23588174582324	39.0	35.6	41.0	31.0	41.0
50-54	36.90949466390914	39.0	35.0	40.6	31.0	41.0
55-59	36.670816289093196	38.4	35.0	40.6	31.0	41.0
60-64	35.974017927499354	37.2	34.4	40.0	30.0	41.0
65-69	35.20962739246752	35.8	34.0	39.2	29.4	41.0
70-74	34.358058113920336	35.0	33.6	38.0	29.0	40.2
75-79	33.23105343132125	34.8	32.4	36.2	27.6	39.0
80-84	32.918091204620225	35.0	33.0	35.6	27.6	37.2
85-89	32.11411057243591	35.0	32.8	35.0	26.4	36.2
90	31.633494879497373	35.0	32.0	35.0	26.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	15.0
12	119.0
13	892.0
14	4076.0
15	10293.0
16	17291.0
17	23785.0
18	29717.0
19	37115.0
20	45351.0
21	54245.0
22	63150.0
23	76562.0
24	96035.0
25	126163.0
26	166974.0
27	222344.0
28	295917.0
29	385628.0
30	492242.0
31	622927.0
32	790177.0
33	1023463.0
34	1384537.0
35	1998459.0
36	3136151.0
37	4749609.0
38	5574110.0
39	3310409.0
40	87346.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.11517241156141	13.08495508497612	10.408126448088845	49.39174605537362
2	22.637115448709938	19.34763047499261	34.95097421956212	23.064279856735332
3	25.599753829813064	21.700603687348394	23.030261869618904	29.669380613219637
4	27.712909296404902	28.047703489798348	19.544568235812285	24.69481897798446
5	29.317929892090678	30.082120105689796	21.363598022678822	19.236351979540707
6	24.087055110589272	33.129793384131915	21.685469811966936	21.097681693311873
7	21.387218435069492	19.07544283503042	37.5311895441687	22.006149185731392
8	21.53426398811977	22.23103051097232	29.192246621987692	27.04245887892022
9	21.623370319420417	21.044453798945806	31.56571391741676	25.76646196421702
10-14	24.619378947328393	26.343881810580573	24.706792103767363	24.329947138323675
15-19	24.964615178149003	25.207755063284704	25.14793242638601	24.679697332180282
20-24	24.73876626099768	25.429714577027575	25.456266334372113	24.37525282760264
25-29	24.653990899695042	25.440367821286603	25.383692326472506	24.52194895254585
30-34	24.68161114004329	25.36442240630592	25.335813828361793	24.618152625288996
35-39	24.71181776942513	25.4910752537044	25.288110928801473	24.508996048068994
40-44	24.67714604110419	25.331233267918513	25.4367132232264	24.5549074677509
45-49	24.59073015102452	25.398543768278437	25.377380031182213	24.63334604951483
50-54	24.62645800259891	25.468693046262075	25.399259008795056	24.50558994234396
55-59	24.642325543125498	25.40507800572413	25.379412681312765	24.573183769837605
60-64	24.54765604588973	25.43607525355378	25.48146503686784	24.534803663688646
65-69	24.56319606786693	25.5388899718904	25.46280227917298	24.435111681069692
70-74	24.618085237827387	25.468921618048274	25.39219593306174	24.5207972110626
75-79	24.58325627344808	25.436170229564496	25.472942256147803	24.507631240839622
80-84	24.524692411634675	25.566595687370057	25.49216660133658	24.416545299658683
85-89	24.60935914830905	25.54238848178001	25.406808934462315	24.441443435448623
90	24.317758424119152	25.643202019462695	25.62742345654778	24.41161609987037
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.50691846693503
2	45.70139530544527
3	55.2691344430327
4	52.40772827438936
5	48.55428187163138
6	45.184736803901146
7	43.39336762080088
8	48.57672286703998
9	47.38983228363743
10-14	48.94932608565207
15-19	49.644312510329286
20-24	49.114019088600315
25-29	49.17593985224089
30-34	49.29976376533229
35-39	49.22081381749413
40-44	49.23205350885509
45-49	49.22407620053935
50-54	49.13204794494287
55-59	49.21550931296311
60-64	49.08245970957838
65-69	48.99830774893662
70-74	49.13888244888999
75-79	49.0908875142877
80-84	48.941237711293354
85-89	49.05080258375767
90	48.72937452398951
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	6.0
1	4.0
2	3.0
3	3.0
4	4.0
5	3.5
6	9.0
7	18.0
8	25.0
9	67.0
10	103.0
11	124.0
12	174.0
13	255.5
14	420.0
15	675.0
16	1184.0
17	2089.5
18	3634.0
19	6398.5
20	8158.0
21	10980.0
22	18581.5
23	30253.0
24	46400.0
25	68778.5
26	98203.0
27	135288.5
28	177623.5
29	222801.5
30	246429.0
31	271525.5
32	322367.0
33	378447.0
34	439721.5
35	498289.0
36	559556.0
37	627410.5
38	686085.0
39	735072.0
40	759600.0
41	776748.0
42	810517.0
43	840430.5
44	858932.5
45	868393.0
46	868553.5
47	863115.0
48	863231.0
49	863264.5
50	861834.0
51	853722.0
52	843294.5
53	827509.5
54	818551.0
55	817715.5
56	803102.0
57	783104.5
58	754736.0
59	720023.0
60	702948.0
61	682157.5
62	638585.5
63	585595.5
64	523765.0
65	462157.0
66	399658.0
67	335598.5
68	277403.0
69	222323.5
70	193893.0
71	169815.0
72	125886.5
73	89439.5
74	59224.5
75	36090.0
76	20540.5
77	10711.5
78	4954.5
79	2103.0
80	1213.0
81	874.5
82	377.0
83	164.5
84	92.5
85	63.0
86	39.5
87	22.0
88	13.0
89	9.5
90	10.0
91	9.5
92	5.0
93	1.5
94	1.0
95	0.5
96	0.5
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.41434673662166627
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0027270784224773777
8	0.0
9	0.0018207377355388109
10-14	0.0018674646331765324
15-19	2.0624285853890954E-4
20-24	0.0015299030795523016
25-29	0.001061828467008917
30-34	0.0015299030795523016
35-39	0.004169167159917409
40-44	0.003461818606022243
45-49	0.0022710883524265078
50-54	0.0027303009671420485
55-59	6.743174710822941E-4
60-64	5.325255058367937E-4
65-69	2.5055284767812834E-4
70-74	0.004355269114302129
75-79	0.0010199353863682011
80-84	0.0016048272430058898
85-89	0.001072301737169096
90	0.0011319188134654994
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.4825102E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	56.126998510606505
#Duplication Level	Relative count
1	100.0
2	32.61519193162093
3	17.626507877216497
4	11.218167036540617
5	7.644305772230889
6	5.694227769110764
7	4.412120146777702
8	3.4618004438487398
9	2.8289863988925754
10++	34.225791566873944
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5136410	2.5633392	5.0713906	1
CCTGG	5155035	2.5615277	6.0511584	1
GAAGA	5338715	2.5589917	5.255799	2
CTTCT	5424980	2.5428426	5.280498	1
AAGAA	5353800	2.503227	5.0719	2
CTGGA	5014450	2.4419327	8.292755	1
TCCAG	4862685	2.3569453	5.1819663	2
CTCCT	4793075	2.3023512	6.6296215	1
CTGGG	4529390	2.2612274	7.9912586	1
CAGGA	4545670	2.2232444	5.3405356	1
CTTCA	4699440	2.212312	5.4245296	1
CTCCA	4520865	2.1810107	7.10952	1
CCCAG	4384650	2.177932	6.8368683	1
CAGAA	4415525	2.1065776	5.05907	1
CTCTG	4247895	2.0500677	6.033822	1
CTGGC	3788705	1.8826009	5.0299745	1
CTGAA	3920270	1.8622252	5.2300153	1
TGGAA	3894430	1.858648	5.0344806	2
CTCAG	3608695	1.7491357	5.820999	1
CTTGG	3374870	1.6363963	5.1749887	1
>>END_MODULE
